Chung-I Wu

Biosciences Graduate Program Association
  1. Reply to evolutionary flux of canonical microRNAs and mirtrons in Drosophila. Nat Genet. 2010 Jan; 42(1):9-10. View in: PubMed

  2. A locus in Drosophila sechellia affecting tolerance of a host plant toxin. Genetics. 2013 Nov; 195(3):1063-75. View in: PubMed

  3. Determination of genomic copy number alteration emphasizing a restriction site-based strategy of genome re-sequencing. Bioinformatics. 2013 Nov 15; 29(22):2813-21. View in: PubMed

  4. Evolution under canalization and the dual roles of microRNAs: a hypothesis. Genome Res. 2009 May; 19(5):734-43. View in: PubMed

  5. Poly A- transcripts expressed in HeLa cells. PLoS One. 2008 Jul 30; 3(7):e2803. View in: PubMed

  6. Adaptive evolution of newly emerged micro-RNA genes in Drosophila. Mol Biol Evol. 2008 May; 25(5):929-38. View in: PubMed

  7. The birth and death of microRNA genes in Drosophila. Nat Genet. 2008 Mar; 40(3):351-5. View in: PubMed

  8. Compound tests for the detection of hitchhiking under positive selection. Mol Biol Evol. 2007 Aug; 24(8):1898-908. View in: PubMed

  9. Comparisons of site- and haplotype-frequency methods for detecting positive selection. Mol Biol Evol. 2007 Jul; 24(7):1562-74. View in: PubMed

  10. Adaptive genic evolution in the Drosophila genomes. Proc Natl Acad Sci U S A. 2007 Feb 13; 104(7):2271-6. View in: PubMed

  11. Statistical tests for detecting positive selection by utilizing high-frequency variants. Genetics. 2006 Nov; 174(3):1431-9. View in: PubMed

  12. Genomic inferences of the cis-regulatory nucleotide polymorphisms underlying gene expression differences between Drosophila melanogaster mating races. Mol Biol Evol. 2006 Aug; 23(8):1585-91. View in: PubMed

  13. Proper control of genetic background with precise allele substitution: a comment on Coyne and Elwyn. Evolution. 2006 Mar; 60(3):623-5; discussion 626-7. View in: PubMed

  14. The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication. Trends Genet. 2006 Mar; 22(3):126-31. View in: PubMed

  15. Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Molecular genetics of natural populations. Mol Biol Evol. 2006 May; 23(5):883-6. View in: PubMed

  16. Adaptive loss of an old duplicated gene during incipient speciation. Mol Biol Evol. 2006 Feb; 23(2):401-10. View in: PubMed

  17. A new method for estimating nonsynonymous substitutions and its applications to detecting positive selection. Mol Biol Evol. 2006 Feb; 23(2):372-9. View in: PubMed

  18. Detecting novel low-abundant transcripts in Drosophila. RNA. 2005 Jun; 11(6):939-46. View in: PubMed

  19. Evolution of sexual isolation in laboratory populations: fitness differences between mating types and the associated hybrid incompatibilities. Am Nat. 2005 Apr; 165(4):429-38. View in: PubMed

  20. Evolution of sexual isolation during secondary contact: genotypic versus phenotypic changes in laboratory populations. Am Nat. 2005 Apr; 165(4):420-8. View in: PubMed

  21. Weak selection revealed by the whole-genome comparison of the X chromosome and autosomes of human and chimpanzee. Proc Natl Acad Sci U S A. 2005 Mar 15; 102(11):4063-7. View in: PubMed

  22. Inferring the mode of speciation from genomic data: a study of the great apes. Genetics. 2005 Jan; 169(1):259-64. View in: PubMed

  23. The normal function of a speciation gene, Odysseus, and its hybrid sterility effect. Science. 2004 Jul 02; 305(5680):81-3. View in: PubMed

  24. A universal evolutionary index for amino acid changes. Mol Biol Evol. 2004 Aug; 21(8):1548-56. View in: PubMed

  25. A case for conservation. Nature. 2004 Mar 11; 428(6979):213-4. View in: PubMed

  26. Genes and speciation. Nat Rev Genet. 2004 Feb; 5(2):114-22. View in: PubMed

  27. Inference of positive and negative selection on the 5' regulatory regions of Drosophila genes. Mol Biol Evol. 2004 Feb; 21(2):374-83. View in: PubMed

  28. Ecological adaptation during incipient speciation revealed by precise gene replacement. Science. 2003 Dec 05; 302(5651):1754-7. View in: PubMed

  29. Comment on "Chromosomal speciation and molecular divergence-accelerated evolution in rearranged chromosomes". Science. 2003 Nov 07; 302(5647):988; author reply 988. View in: PubMed

  30. Sexual antagonism and X inactivation--the SAXI hypothesis. Trends Genet. 2003 May; 19(5):243-7. View in: PubMed

  31. A mutation in the promoter of desaturase 2 is correlated with sexual isolation between Drosophila behavioral races. Genetics. 2002 Oct; 162(2):781-4. View in: PubMed

  32. Testing the neutral theory of molecular evolution with genomic data from Drosophila. Nature. 2002 Feb 28; 415(6875):1024-6. View in: PubMed